PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_690C97429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 283aa    MW: 31394.6 Da    PI: 5.1223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_690C97429.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.55.5e-551052091102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql+ fw++q   ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Traes_6AS_690C97429.1 105 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITR 192
                            89*****996677899************************************************************************ PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            tdi+dflvdi+prd++k
  Traes_6AS_690C97429.1 193 TDIYDFLVDIIPRDDMK 209
                            **************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3009.2E-478119IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF471132.51E-3385199IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-37120191IPR009072Histone-fold
PfamPF008089.4E-21127190IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKINCSIPLI VLRSAQEVFG FARTRSHMEP SSQPEPVVGV ATAGSQAYPP PAAYPAPAMP  60
AAIPPGSQPA VPFPANPAQL SAQHQLVYQQ AQQFHQQLQQ QQQQQLREFW ATQMEEIEQA  120
TDFKNHTLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEV FILELTLRSW MHTEENKRRT  180
LQKNDIAAAI TRTDIYDFLV DIIPRDDMKE EGLGLPRVGL PPAALGAPAD AYPPYYYVQA  240
QQVPGVGMMY GGQQGHPVAY AWQQPQGQQA EEAPEEQQQS PSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B3e-42112205297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027930.0GU902793.1 Triticum monococcum nuclear transcription factor Y subunit C7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570159.11e-132PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG78e-74NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLM8AIC50.0M8AIC5_TRIUA; Nuclear transcription factor Y subunit C-2
STRINGMLOC_53118.11e-154(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-64nuclear factor Y, subunit C2